Live Example在线示例

Yeast SNF2 RNA-seq standard reportYeast SNF2 RNA-seq 标准流程报告

A complete public reference example produced by rnaseq-standard-flow 0.2.0-r2 and collected by rnaseq-report-flow 0.2.0-r2. It includes Salmon expression, HISAT2 alignment, featureCounts-based DE, enrichment, QC HTML bundles, plots, tables, and provenance.

这是由 rnaseq-standard-flow 0.2.0-r2 生成、由 rnaseq-report-flow 0.2.0-r2 收集的完整有参公开示例,包含 Salmon 表达定量、HISAT2 比对、基于 featureCounts 的差异分析、富集、QC HTML 子报告、图表和溯源文件。

24samples样本
5780tested genes测试基因
367significant genes显著基因
1428GSEA termsGSEA 条目
Sample correlation heatmap

Sample correlation样本相关性

DEG counts barplot

DEG counts差异基因数量

GSEA NES plot

GSEA NES

What is included

包含内容

  • 04_reports/rnaseq_report.html
  • 04_reports/report_interpretation.html
  • 03_results/collected_plots/
  • 03_results/collected_tables/
  • 03_results/collected_html/
  • run.manifest.json

Run summary

运行摘要

The report collector found 8 modules, 136 collected files, 28 plot files, 56 collected tables, and 52 linked HTML reports.

报告收集器发现 8 个模块、136 个收集文件、28 个图文件、56 个表格和 52 个 HTML 子报告链接。