Live Example在线示例

Yeast SNF2 RNA-seq standard reportYeast SNF2 RNA-seq 标准流程报告

A complete public reference example produced by rnaseq-standard-flow 0.3.0-r1 and collected by rnaseq-report-flow 0.3.0-r2. It includes Salmon expression, HISAT2 alignment, featureCounts-based DE, enrichment, embedded QC HTML payloads, plots, tables, and provenance.

这是由 rnaseq-standard-flow 0.3.0-r1 生成、由 rnaseq-report-flow 0.3.0-r2 收集的完整有参公开示例,包含 Salmon 表达定量、HISAT2 比对、基于 featureCounts 的差异分析、富集、内嵌 QC HTML payload、图表和溯源文件。

24samples样本
4684tested genes测试基因
257significant genes显著基因
1356GSEA termsGSEA 条目
Sample correlation heatmap

Sample correlation样本相关性

DEG counts barplot

DEG counts差异基因数量

GSEA NES plot

GSEA NES

What is included

包含内容

  • 04_reports/rnaseq_report.html
  • 04_reports/report_interpretation.html
  • 03_results/collected_plots/
  • 03_results/collected_tables/
  • 03_results/collected_html/
  • run.manifest.json

Run summary

运行摘要

The report collector found 8 modules, 137 collected files, 28 plot files, 56 embedded tables, and 53 embedded HTML/QC reports.

报告收集器发现 8 个模块、137 个收集文件、28 个图文件、56 个内嵌表格和 53 个内嵌 HTML/QC 子报告。