Examples示例
The yeast SNF2 examples show how the same public biological question can be processed through a reference route and a de novo route. Both reports include plots, tables, QC bundles, report interpretation guides, and provenance files.
yeast SNF2 示例展示同一个公开生物学问题如何分别通过有参路线和无参路线处理。两个报告都包含图表、表格、QC 子报告、报告解读指南和溯源文件。
Both examples are derived from public yeast SNF2 RNA-seq data: ENA / NCBI BioProject PRJEB5348, author resources from bartongroup/profDGE48, SGD S288C R64.4.1, and Gene Ontology resources. The reports are generated outputs; data-source and attribution details are kept at the example-entry level.
两个示例都派生自公开 yeast SNF2 RNA-seq 数据：ENA / NCBI BioProject PRJEB5348、来自 bartongroup/profDGE48 的作者资源、SGD S288C R64.4.1 和 Gene Ontology 资源。报告是自动生成结果；数据来源和归属说明放在示例入口层维护。
A bulk RNA-seq example generated from genome and annotation inputs. It demonstrates the reference route with Salmon expression, HISAT2 alignment, featureCounts DE source, enrichment, and a final bilingual report.
从基因组和注释输入生成的 bulk RNA-seq 示例，用于展示包含 Salmon 表达、HISAT2 比对、featureCounts 差异分析来源、富集和最终双语报告的有参路线。
A no-reference example generated by rnaseq-standard-flow 0.3.0-r1. It demonstrates Trinity-first assembly, Salmon quantification against assembled transcripts, homology annotation, transcript-level DE, enrichment, and report delivery.
由 rnaseq-standard-flow 0.3.0-r1 生成的无参示例，展示 Trinity-first 组装、基于组装转录本的 Salmon 定量、同源注释、转录本层面差异分析、富集和报告交付。